OXFORD UNIVERSITY COMPUTING LABORATORY

Jonathan Cooper

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Mr Jonathan Cooper

Teaching Assistant
Research Assistant
Doctoral Student
Student, St John's College

interests

I am interested in the application of software engineering to computational biology - using technology well to enable better science. My own research has focussed on automating both the validation and optimisation of biological (in particular, cardiac) models described using the CellML language.

biography

Between 2001-2004 I studied for a BA in Mathematics & Computer Science at the University of Oxford. On graduating with first class honours I joined the Life Sciences Interface Doctoral Training Centre to undertake a DPhil with the Integrative Biology project.

In June 2008 I started a post-doctoral research position with the Virtual Physiological Human Network of Excellence project, based in OUCL.

links

Personal website

publications

CellML and Associated Tools and Techniques

Alan Garny et al.

Phil Trans Roy Soc A, Vol. 366, No. 1878, pages 3017—3043. 2008.

A Game-based Abstraction-Refinement Framework for Markov Decision Processes

M. Kattenbelt et al.

No. RR-08-06, Technical Report, Oxford University Computing Laboratory. February 2008.

Chaste: using agile programming techniques to develop computational biology software

Joe Pitt-Francis, Miguel O. Bernabeu, Jonathan Cooper, Alan Garny, Lee Momtahan, James Osborne, Pras Pathmanathan, Blanca Rodriguez, Jonathan P. Whiteley, David J. Gavaghan

Phil Trans Roy Soc A, Vol. 366, No. 1878, pages 3111-3136. 2008.

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location

Room 279, Wolfson Building, Parks Road, Oxford OX1 3QD

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