Pras Pathmanathan: Publications

[1]

Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library

Bernabeu MO, Bordas R, Pathmanathan P, Pitt-Francis J, Cooper J, Garny A, Gavaghan DJ, Rodriguez B, Southern JA, Whiteley JP

Phil Trans Roy Soc (A), Vol. 367, No. 1895, pages 1907-1930. May 2009.

Details | BibTeX | DOI (10.1098/rsta.2008.0309)

[2]

Chaste: A test-driven approach to software development for biological modelling

J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, AG Fletcher, GR Mirams, P Murray, JM Osborne, A Walter, SJ Chapman, A Garny, I van Leeuwen, PK Maini, B RodrÃguez, SL Waters, JP Whiteley, HM Byrne, DJ Gavaghan

Computer Physics Communications, Vol. (in press). 2009.

Details | BibTeX

[3]	A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems P Pathmanathan, JP Whiteley, SJ Chapman, DJ Gavaghan Journal of Applied Mechanics, Vol. (in press). 2009. Details \| BibTeX

[4]	A comparison of numerical methods used for finite element modelling of soft tissue deformation P Pathmanathan, DJ Gavaghan, JP Whiteley The Journal of Strain Analysis for Engineering Design, Vol. 44(5), pages 391-406. 2009. Details \| BibTeX

[5]	Inverse membrane problems in elasticity P Pathmanathan, DJ Gavaghan, SJ Chapman Quarterly Journal of Mechanics and Applied Mathematics, Vol. 62(1), pages 67-88. 2009. Details \| BibTeX

[6]	A Numerical Method for Cardiac Mechanoelectric Simulations P. Pathmanathan, J.P. Whiteley Annals of Biomedical Engineering, Vol. 37(5), pages 860-873. 2009. Details \| BibTeX

[7]	A computational study of discrete mechanical tissue models P Pathmanathan et al. Physical Biology, Vol. 6, No. 3, 2009. Details \| BibTeX \| DOI (10.1088/1478-3975/6/3/036001)

[8]

An integrative computational model for intestinal tissue renewal

IMM van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, S Varma, SJ Young, J Cooper, B Doyle, J Pitt-Francis, L Momtahan, P Pathmanathan, JP Whiteley, SJ Chapman, DJ Gavaghan, OE Jensen, JR King, PK Maini, SL Waters, HM Byrne

Cell Proliferation, 2009.

Details | BibTeX

[9]

Chaste: Using Agile Programming Techniques to Develop Computational Biology Software

J Pitt-Francis, MO Bernabeu, JC, A Garny, L Momtahan, J Osborne, P Pathmanathan, B Rodriguez, JP Whiteley, DJ Gavaghan

Philosophical Transactions of the Royal Society A, Vol. 366(1878), pages 3111-3136. 2008.

Details | BibTeX

[10]	Predicting tumor location by modeling the deformation of the breast P Pathmanathan, DJ Gavaghan, JP Whiteley, SJ Chapman, JM Brady IEEE Transactions on Biomedical Engineering, Vol. 55(10), pages 2471-2480. 2008. Details \| BibTeX

[11]	Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity P. Pathmanathan et al. In Proceedings of MICCAI 2004 Vol. 3217 of Lecture Notes in Computer Science, pages 217—224. 2004. Details \| BibTeX